Lee2023 includes a total of 9,251 human microbiome samples from multiple body sites (7718 stool, 783 oral cavity, 410 skin, 150 airway, 93 nasal cavity, 88 vagina, and 9 milk) which had been sequenced in various studies.
data(Lee2023)A TreeSummarizedExperiment with 4182 features and 5195 samples. The rowData contains taxonomic information at Kingdom, Phylum, Class, Order, Family and Genus level. See dataset summary.
Lee, K., Raguideau, S., Sirén, K. et al. Population-level impacts of antibiotic usage on the human gut microbiome. Nat Commun 14, 1191 (2023). https://doi.org/10.1038/s41467-023-36633-7